Recent publications
2021
2020
Murphy, B., T. Walsworth, P. Belmont, M.M. Conner, and P. Budy. 2020. Dynamic Habitat Disturbance and Ecological Response (DyHDER)-PVA: modeling fish population dynamics in response to landscape disturbance .Conner, M.M., P. Budy, R. Wilkion, M. Mill, D. Speas, P. MacKinnon, and M. McKinstry. 2020. Estimating population abundance with a mixture of physical capture and passive PIT tag antenna detection data .Budy, P., P.D. Thompson, M.D. McKell, G.P. Thiede, T. Walsworth, and M.M. Conner. 2020. A multi-faceted reconstruction of the metapopulation structure and life history expressions of a remnant metapopulation of Bonneville Cutthroat Trout (Oncorhynchus clarkii utah ): implications for maintaining intermittent connectivity.https://doi.org/10.1002/tafs.10240 .Healy, Brian D., R.C. Schelly, C.B. Yackulic, E. C. Omana Smith, and P. Budy. 2020. Remarkable response of native fishes to invasive trout suppression varies with trout density, temperature, and annual hydrology .Stout, B., M. Conner, P. Budy, P. MacKinnon, and M. McKinstry. 2020. Keeping it classy: Differentiating between live fish and ghost tags detected with a mobile PIT tag interrogation system using an innovative analytical approach .Clancy, N.G., J. Brahney, J. Dunnigan, and P. Budy. 2020. Do Didymosphenia geminata blooms affect fishes in the Kootenai River basin? Accepted with major revisions 25 June 2020 . https://doi.org/10.1139/cjfas-2020-0121 . USGS FSP: IP-118864.Klobucar, S.L., and P. Budy. 2020. Trophic structure of apex fish communities in closed versus leaky lakes of arctic Alaska .Budy, P., T. Walsworth, G.P. Thiede, P.D. Thompson, M.D. McKell, P. B. Holden, P. D. Chase, and W.C. Saunders. 2020. Remarkably rapid recovery of native trout following removal of a dominant non-native trout sub-population: evidence of resilience and conservation potential .
2019
Budy, P., K.B. Rogers, Y. Kanno, B. Penaluna, N.H. Hitt. G.P Thiede, J. Dunham, C. Mellison, and W.L. Somer., and J. DeRitto. 2019. Distribution and Status of Trout and Char in North America. Invited Chapter 8 in: Diversity and Status of Trout and Char of the World . USGS FSP: IP-088494 .Hansen, M., P. Budy , C. Guy, and T. McMahon. 2019. Trout as Native and Invasive Species: a Management Paradox. USGS FSP: IP-095921 . Stout, J.B, M.M. Conner, P. Budy, P. Mackinnon, and M. McKinstry. 2019. We ain’t afraid of no ghosts: Tracking habitat interactions and movement dynamics of ghost tags under differing flow conditions in a sand bed river . Zhang, Q. , J. Jin, X. Wang. P. Budy, N. Barrett, and S. Null. 2019. Improving lake mixing process simulations in the Community Land Model by using K profile parameterization .
2018
Dornelas, M and P. Budy (#25) and 182 others. 2018. BioTIME: a database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography , Global 2018; 00:1–26. https://doi.org/10.1111/geb.12729 .Laub, B.G., G.P. Thiede, W.W. MacFarlane, and P. Budy. 2018. Evaluating the conservation potential of tributaries for native fish in the Upper Colorado River Basin. Fisheries , Feature Article 43:194-206Meredith, C. P. Budy, and J Schmidt. 2018. Investigating scour depths in relation to patterns of spawning brown trout and the changing physical template of a mountain river. River Research and Applications , 2018:1-11. DOI: 10.1002/rra.3321.Klobucar, S.L., J.W. Gaeta, and P. Budy. 2018. A changing menu in a changing climate: using experimental and long-term data to predict invertebrate prey biomass and availability in arctic lakes. Freshwater Biology , 2018:1-13. DOI: 10.1111/fwb.13162.Heredia, N. and P. Budy. 2018. Trophic ecology of Lahontan Cutthroat Trout Oncorhynchus Clarkii Henshawi : historical predator-prey interaction supports native apex predator in unique desert lake. Transactions of the American Fisheries Society , 147:842–854.LaPlanche, C., A. Elger, F, Santoul, G.P. Thiede, and P. Budy. 2018. Forecasting the eradication success of an exotic fish from an alpine stream Biological Conservation , 223:34-46.Brian G. Laub, Gary P. Thiede, William W. Macfarlane, Phaedra Budyc, April 2018. Evaluating the Conservation Potential of Tributaries for Native Fishes in the Upper Colorado River Basin Fisheries , Vol. 43. No.4.
2017
Phaedra Budy and Jereme W. Gaeta. 2017. Brown Trout as an Invader: A Synthesis of Problems and Perspectives in North America Brown Trout: Biology, Ecology and Management , First Edition. Edited by Javier Lobón-Cerviá and Nuria Sanz..Phaedra E. Budy, Tracy Bowerman, Robert Al-Chokhachy, Mary Conner, and Howard Schaller. 2017. Quantifying long-term population growth rates of threatened bull trout: challenges, lessons learned, and opportunities ***Winters, L.K., P. Budy, and G.P. Thiede. 2017. Earning their stripes: the potential of tiger trout and other salmonids as biological controls of forage fishes in a western reservoir. ***Strohm, D. P. Budy, and T.A. Crowl. 2017. Matching watershed and otolith chemistry to establish natal origin of an endangered desert lake sucker. Klobucar, S.L., T. Rodgers, and P. Budy. 2017. At the forefront: evidence of the applicability of using environmental DNA to quantify the abundance of fish populations in natural lentic waters with additional sampling considerations. Budy, P., T. Bowerman, R. Al-Chokhachy, M.M. Conner, and H. Schaller. 2017. Budy, P. and J. Gaeta. In press. Laub, B.G., G.P. Thiede, W.W. MacFarlane, and P. Budy. 2017. Budy, P., K.B. Rogers, Y. Kanno, B. Penaluna, N.H. Hitt. J. Dunham, C. Mellison, W.L. Somer, and J. DeRitto. In press. Hansen, M., P. Budy, C. Guy, and T. McMahon In press.
2016
2015
Dibble, K.L., C.B. Yackulic, T.A. Kennedy, P. Budy. 2015. Flow management and fish density regulate salmonid recruitment and adult size in tailwaters across western North America. .Winters, L. and P. Budy. 2015. Exploring crowded trophic niche space in a novel reservoir fish assemblage: how many predators is too many? .Phaedra Budy, Mary M. Conner, Nira L. Salant, and William W. Macfarlane. 2015. An occupancy-based quantification of the highly
imperiled status of desert fishes of the southwestern United States .Dibble, Yackulic, Kennedy, and Budy. 2015. Ecological Applications .Brian G. Laub and Phaedra Budy. 2015. Assessing the likely effectiveness of multispecies management for imperiled desert fishes with niche overlap analysis .Brian G. Laub, Justin Jimenez, and Phaedra Budy. 2015. Application of Science-Based Restoration Planning to a Desert River System .Timothy E. Walsworthabd and Phaedra Budy. 2015. Integrating Nonnative Species in Niche Models to Prioritize Native Fish Restoration Activity Locations along a Desert River Corridor .
2014
Phaedra Budy, Chris Luecke. 2014. Understanding how lake populations of arctic char are structured and function with special consideration of the potential effects of climate change: a multi‑faceted approach .Stephen Bennett, Robert Al-Chokhachy, Brett B. Roper & Phaedra Budy. 2014. Annual Variation of Spawning Cutthroat Trout in a Small Western USA Stream: A Case Study with Implications for the Conservation of Potamodromous Trout Life History Diversity .Tracy Bowerman, Bethany T. Neilson, and Phaedra Budy. 2014. Effects of fine sediment, hyporheic flow, and spawning site characteristics on survival and development of bull trout embryos .Christy S. Meredith, Phaedra Budy, Gary P. Thiede. 2014. Predation on native sculpin by exotic brown trout exceeds that by native cutthroat trout within a mountain watershed (Logan, UT, USA) .W. Carl Saunders, Phaedra Budy, Gary P. Thiede. 2014. Demographic changes following mechanical removal of exotic brown trout in an Intermountain West (USA), high-elevation stream .
2013
Timothy E. Walsworth1, Phaedra Budy, Gary P. Thiede. 2013. Longer food chains and crowded niche space: effects of multiple invaders on desert stream food web structure .Jared L. Bottcher, Timothy E. Walsworth, Gary P. Thiede, Phaedra Budy & David
W. Speas. 2013. Frequent Usage of Tributaries by the Endangered Fishes of the Upper Colorado River Basin: Observations from the San Rafael River, Utah .Nate Hough-Snee, Brett B. Roper, Joseph M. Wheaton, Phaedra Budy, Ryan L. Lokteff. 2013. Riparian vegetation communities change rapidly following passive
restoration at a northern Utah stream .
2012
Lobón‐Cerviá, J. , P. Budy, and E. Mortensen. 2012. Patterns of natural mortality in stream-living Brown Trout (Salmo trutta L.) .Freshwater Biology . Accepted November 23, 2011.Budy ,P., S. Wood, and B. Roper. 2012. Exploring spawning dynamics and potential limiting factors for the early life stages of native cutthroat trout .North American Journal of Fisheries Management . Accepted 7 February, 2012. Manuscript ID: M10-175R.Nira L. Salant, John C. Schmidt, Phaedra Budy, Peter R. Wilcock 2012. Unintended consequences of restoration: Loss of riffles and gravel substrates following weir installation .Journal of Environmental Management 109 (2012) 154e163 . Accepted 15 May, 2012. McIntosh, A., P.A. McHugh, S. Howard and, P. Budy. 2012. Niche flexibility and trout–galaxiid co-occurrence in a hydrologically diverse riverine landscape .P. A. Weber, P. D. Thompson, and P. Budy. 2012. Status and Structure of two Populations of the Bluehead Sucker (Catostomus Discobolus) in the Weber River, Utah .Tracy Bowerman & Phaedra Budy. 2012. Incorporating Movement Patterns to Improve Survival Estimates for Juvenile Bull Trout .Phaedra Budy, Gary P. Thiede, Andrew Dean, Devin Olsen & Gilbert Rowley. 2012. A Comparative and Experimental Evaluation of Performance of Stocked Diploid and Triploid Brook Trout .Phaedra Budy, Gary P. Thiede, Javier Lobo´ N-Cervia´ , Gustavo Gonzalez Fernandez, Peter McHugh, Angus McIntosh, Lief Asbjorn Vollestad, Eloy Becares, and Philipp Jellyman. 2012. Limitation and facilitation of one of the world’s most invasive fish: an intercontinental comparison .
2011
Hansen, E. S., and P. Budy. 2011. The potential of passive stream restoration to improve ecosystem health and minimize the impact of fish disease: a short-term assessment .Journal of the North American Benthological Society 30:573-588 .Budy, P., M.E. Baker, and S.K. Dahle. 2011. Predicting Fish Growth Potential and Identifying Potential Water Quality Issues: A Spatially Explicit Bioenergetics Approach .Environmental Management. ISSN 0364-152X; DOI 10.1007/s00267-011-9717-1 .Lobón‐Cerviá, J. , G. González, and P. Budy. 2011. Factors driving spatial and temporal variation in production and production ⁄ biomass ratio of stream-resident brown trout (Salmo trutta) in Cantabrian streams .Freshwater Biology 56:2272-2287 .McIntosh, A., P.A. McHugh, and P. Budy. 2011. http://www.earthscan.co.uk/ ).Weber, P.A., P. Thompson, and P. Budy. 2011. Southwest Naturalist . Accepted May 31, 2011. PDF unavailable.
2010
2009
Al-Chokhachy, R., P. Budy, and M. Conner. 2009. Detecting declines in the abundance of a bull trout (Salvelinus confluentus) population: understanding the accuracy, precision, and costs of our efforts .Canadian Journal of Fisheries and Aquatic Sciences 66: 649–658 .Wood, J. and P. Budy. 2009. An investigation of the early life-history and potential influences on invasion success of exotic of brown trout (Salmo trutta) .Transactions of the American Fisheries Society 138:756-767 .Budy, P., G.P. Thiede, C. Luecke, and R.W. Schneidervin. 2009. Warmwater and coldwater fish in two-story standing waters . Invited BOOK Chapter. Pages 159 – 169 in S. Bonar, W.A Hubert, and D.W. Willis, editors. Standard methods for sampling North American freshwater fishes.American Fisheries Society, Bethesda, Maryland .
2008
McHugh, P., P. Budy, G.P. Thiede, and E. VanDyke. 2008. Trophic relationships of nonnative brown trout, Salmo trutta, and native Bonneville cutthroat trout, Oncorhynchus clarkii utah, in a northern Utah, U.S.A. river .Environmental Biology of Fishes 81:63-75 .Vatland, S., P. Budy, and G.P. Thiede. 2008. An approach to modeling striped bass and threadfin shad predator-prey dynamics in Lake Powell, Utah-Arizona. Special Section: Bioenergetics Modeling .Transactions of the American Fisheries Society 137:262-277 .Homel, K. and P. Budy. 2008. Temporal and spatial variability in the migration patterns of juvenile and subadult bull trout (Salvelinus confluentus) in Northeast Oregon .Transactions of the American Fisheries Society 137:869-880 . Homel, K., P. Budy, M.E. Pfrender, T.A. Whitesel, and K. Mock. 2008. Evaluating genetic structure among resident and migratory forms of bull trout (Salvelinus confluentus) in Northeast Oregon .Ecology of Freshwater Fish, Online Early Articles: doi:1-.1111/j.160-0633.2008.00299.x .Budy, P., G.P. Thiede, P. McHugh, E.S. Hansen, and J. Wood. 2008. Exploring the relative influence of biotic interactions and environmental conditions on the abundance and distribution of exotic brown trout (Salmo trutta) in a high mountain stream .Ecology of Freshwater Fish 17:554-566 .Al-Chokhachy, R., and P. Budy. 2008. Demographic characteristics, population structure, and vital rates of a fluvial population of bull trout in Oregon .Transactions of the American Fisheries Society 137:262-277 .
2007
Budy, P., G.P. Thiede, P. McHugh. 2007. A quantification of survival, site-fidelity, abundance, and trend for an important population of endemic cutthroat trout .North American Journal of Fisheries Management 27:593-604 .Budy, P., and H. Schaller. 2007. Evaluating tributary restoration potential for Pacific Salmon recovery .Ecological Applications 17:1068-4086 .Vatland, S., and P. Budy. 2007. Predicting the invasion success of an introduced omnivore in a large, heterogeneous reservoir .Canadian Journal of Fisheries and Aquatic Sciences 64:1329-1345 .Al-Chokhachy, R., and P. Budy. 2007. Summer microhabitat use of fluvial bull trout in Eastern Oregon streams .North American Journal of Fisheries Management 27:1068-1081 .
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